Description
This panel contains genes that cause hereditary spastic paraplegia, both isolated and complicated, with a paediatric onset. The panel was created by merging the paediatric HSP panels created by RMH and VCGS, and is a consensus panel used by both.

For individuals with onset of symptoms in adolescence, please consider applying the Hereditary Spastic Paraplegia_Superpanel, which also contains genes typically associated with adult-onset HSP.

16 reviewers

  • Alison Yeung (Victorian Clinical Genetics Services)

  • Paul De Fazio (Victorian Clinical Genetics Services)

  • Teresa Zhao (Victorian Clinical Genetics Services)

  • Chirag Patel (Genetic Health Queensland)

  • Yetong Chen (University of Melbourne)

  • Ain Roesley (Victorian Clinical Genetics Services)

  • Elena Savva (Victorian Clinical Genetics Services)

  • Lucy Spencer (Victorian Clinical Genetics Services)

  • Dean Phelan (Victorian Clinical Genetics Services)

  • Seb Lunke (Victorian Clinical Genetics Services)

  • Shekeeb Mohammad (Children's Hospital at Westmead)

  • Naomi Baker (Victorian Clinical Genetics Services)

  • Ee Ming Wong (Victorian Clinical Genetics Services)

  • Chern Lim (Victorian Clinical Genetics Services)

  • Bryony Thompson (Royal Melbourne Hospital)

  • Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)

143 Entities

143 reviewed, 100 green

List Entity Reviews Mode of inheritance Details
143 Entitiess
Green Green List (high evidence)
ABCD1
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Adrenoleukodystrophy, MIM# 300100
Tags
Green Green List (high evidence)
ABHD16A
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Spastic paraplegia 86, autosomal recessive, MIM# 619735
  • Intellectual Disability
  • Corpus callosum abnormalities
Tags
Green Green List (high evidence)
ADAR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Aicardi-Goutieres syndrome 6, 615010 autosomal recessive
Tags
Green Green List (high evidence)
AFG3L2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic ataxia 5, autosomal recessive, MIM# 614487
  • Spinocerebellar ataxia 28, MIM# 610246
Tags
Green Green List (high evidence)
AIMP1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Leukodystrophy, hypomyelinating, 3, MIM#260600
Tags
Green Green List (high evidence)
ALDH18A1
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 9B, autosomal recessive, MIM# 616586
  • Spastic paraplegia 9A, autosomal dominant, MIM# 601162
Tags
Green Green List (high evidence)
ALDH3A2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Sjögren-Larsson syndrome
Tags
Green Green List (high evidence)
ALS2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paralysis, infantile onset ascending, MIM# 607225
Tags
Green Green List (high evidence)
AMFR
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Spastic paraplegia 89, autosomal recessive, MIM# 620379
Tags
Green Green List (high evidence)
AP4B1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 47, autosomal recessive, 614066
Tags
Green Green List (high evidence)
AP4E1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 51, autosomal recessive, 613744
Tags
Green Green List (high evidence)
AP4M1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 50, autosomal recessive, 612936
Tags
Green Green List (high evidence)
AP4S1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • developmental delay
  • Spastic paraplegia 52, autosomal recessive, 614067
  • seizures
Tags
Green Green List (high evidence)
ARG1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Progressive spastic tetraplegia
  • Argininaemia, 207800
Tags
  • treatable
Green Green List (high evidence)
ARL6IP1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 61, autosomal recessive, MIM#615685
Tags
Green Green List (high evidence)
ATAD3A
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Harel-Yoon syndrome, MIM# 617183
Tags
Green Green List (high evidence)
ATL1
3 reviews
3 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Hereditary sensory neuropathy type ID, MIM 613708
  • Spastic paraplegia 3A, MIM 182600
  • Hereditary spastic paraplegia, AR
Tags
Green Green List (high evidence)
B4GALNT1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 26, autosomal recessive MIM#609195
Tags
Green Green List (high evidence)
BCAS3
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Hengel-Maroofian-Schols syndrome, MIM# 619641
Tags
Green Green List (high evidence)
BSCL2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Silver spastic paraplegia syndrome MIM#270685
  • Encephalopathy, progressive, with or without lipodystrophy MIM#615924
Tags
Green Green List (high evidence)
C12orf65
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 55, autosomal recessive, 615035
  • optic atrophy and spasticity, tibial muscle weakness and atrophy, peripheral neuropathy
  • Combined oxidative phosphorylation deficiency 7, 613559
Tags
  • new gene name
Green Green List (high evidence)
C19orf12
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Neurodegeneration with brain iron accumulation 4, 614298
  • Spastic paraplegia 43, autosomal recessive, 615043
Tags
Green Green List (high evidence)
CCDC82
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Neurodevelopmental disorder, MONDO:0700092, CCDC82-related
Tags
Green Green List (high evidence)
CYP2U1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 56, autosomal recessive, 615030
Tags
Green Green List (high evidence)
CYP7B1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 5A, autosomal recessive, MIM# 270800
Tags
Green Green List (high evidence)
DARS
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Hypomyelination with brainstem and spinal cord involvement and leg spasticity, MIM# 615281
Tags
  • new gene name
Green Green List (high evidence)
DDHD1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 28, autosomal recessive, MIM# 609340
  • MONDO:0012256
Tags
Green Green List (high evidence)
DDHD2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 54, autosomal recessive, MIM# 615033
  • MONDO:0014018
Tags
Green Green List (high evidence)
ELOVL1
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Ichthyotic keratoderma, spasticity, hypomyelination, and dysmorphic facies, MIM# 618527
Tags
Green Green List (high evidence)
ENTPD1
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 64, autosomal recessive MIM#615683
Tags
Green Green List (high evidence)
ERLIN1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 62, 615681
  • Hereditary spastic paraplegia
Tags
Green Green List (high evidence)
ERLIN2
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 18, autosomal recessive, MIM# 611225
  • Spastic paraplegia 18A, autosomal dominant, MIM# 620512
Tags
Green Green List (high evidence)
FA2H
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 35, autosomal recessive, MIM# 612319
Tags
Green Green List (high evidence)
FAR1
2 reviews
2 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Cataracts, spastic paraparesis, and speech delay, MIM#619338
  • Peroxisomal fatty acyl-CoA reductase 1 disorder, MIM# 616154
Tags
Green Green List (high evidence)
FARS2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 77, autosomal recessive, 617046
Tags
Green Green List (high evidence)
FICD
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Hereditary motor neurone disease, FICD-related, MONDO:0024257
Tags
Green Green List (high evidence)
GAN
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Giant axonal neuropathy-1, MIM# 256850
Tags
Green Green List (high evidence)
GBA2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 46, autosomal recessive, MIM# 614409
Tags
Green Green List (high evidence)
GCH1
2 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Hereditary spastic paraplegia MONDO:0019064, GCH1-related
Tags
Green Green List (high evidence)
GFAP
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Alexander disease MONDO:0008752
Tags
Green Green List (high evidence)
GLRX5
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spasticity, childhood-onset, with hyperglycinemia 616859
Tags
Green Green List (high evidence)
GPT2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Neurodevelopmental disorder with microcephaly and spastic paraplegia, MIM# 616281
Tags
Green Green List (high evidence)
HACE1
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia and psychomotor retardation with or without seizures, 616756
  • MONDO:0014764
  • Spastic paraplegia
  • psychomotor retardation
Tags
Green Green List (high evidence)
HPDL
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Neurodevelopmental disorder with progressive spasticity and brain white matter abnormalities (NEDSWMA), MIM#619026
  • Progressive neurological disorder
  • Leigh-like syndrome
Tags
Green Green List (high evidence)
HSPD1
1 review
1 green
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Leukodystrophy, hypomyelinating, 4, MIM# 612233
  • Spastic paraplegia 13, autosomal dominant, MIM# 605280
Tags
Green Green List (high evidence)
IBA57
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 74, autosomal recessive MIM#616451
Tags
Green Green List (high evidence)
IFIH1
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Aicardi-Goutieres syndrome 7 MIM#615846
Tags
Green Green List (high evidence)
KDM5C
1 review
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Intellectual developmental disorder, X-linked syndromic, Claes-Jensen type MIM# 300534
  • MONDO:0010355
Tags
Green Green List (high evidence)
KIDINS220
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia, intellectual disability, nystagmus, and obesity, MIM# 617296
  • MONDO:0015007
Tags
Green Green List (high evidence)
KIF1A
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 30, autosomal dominant MIM# 610357
  • Spastic paraplegia 30, autosomal recessive 620607
Tags
Green Green List (high evidence)
KIF1C
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic ataxia 2, autosomal recessive, 611302
  • Spastic ataxia 2, autosomal recessive
Tags
Green Green List (high evidence)
KIF5A
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 10, autosomal dominant, MIM# 604187
Tags
Green Green List (high evidence)
KLC2
2 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia, optic atrophy, and neuropathy, MIM#609541
Tags
  • SV/CNV
Green Green List (high evidence)
KPNA3
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Spastic paraplegia-88 (SPG88), MIM#620106
Tags
Green Green List (high evidence)
L1CAM
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Hereditary spastic paraplegia, 308840
  • MASA syndrome, 303350
  • X-linked hydrocephalus, 307000
Tags
Green Green List (high evidence)
MAG
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 75, autosomal recessive, 616680
  • Cerebellar ataxia
Tags
Green Green List (high evidence)
MAPK8IP3
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Neurodevelopmental disorder with or without variable brain abnormalities 618443
Tags
Green Green List (high evidence)
MARS2
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Australian Genomics Health Alliance Mitochondrial Flagship
  • Expert list
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Spastic ataxia 3, autosomal recessive MIM#611390
Tags
  • SV/CNV
Green Green List (high evidence)
MED27
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Neurodevelopmental disorder with spasticity, cataracts, and cerebellar hypoplasia, MIM# 619286
Tags
Green Green List (high evidence)
NFU1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Multiple mitochondrial dysfunctions syndrome 1 (MIM#605711)
Tags
Green Green List (high evidence)
NIPA1
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 6, autosomal dominant, MIM# 600363
Tags
Green Green List (high evidence)
NKX6-2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophy, 617560
  • MONDO:0033043
Tags
Green Green List (high evidence)
NOTCH1
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Genetic cerebral small vessel disease (MONDO:0018787), NOTCH1-related
Tags
Green Green List (high evidence)
NT5C2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 45, autosomal recessive, MIM# 613162
  • MONDO:0013165
Tags
Green Green List (high evidence)
OPA3
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • 3-methylglutaconic aciduria, type III, MIM# 258501
Tags
Green Green List (high evidence)
PCYT2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • global developmental delay
  • regression
  • spastic parapesis or tetraparesis
  • epilepsy
  • progressive cerebral and cerebellar atrophy
Tags
Green Green List (high evidence)
PI4KA
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Neurodevelopmental syndrome with hypomyelinating leukodystrophy
  • Spastic paraplegia 84, autosomal recessive, MIM# 619621
Tags
Green Green List (high evidence)
PLP1
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 2, X-linked, MIM# 312920
Tags
Green Green List (high evidence)
RAB3GAP2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Martsolf syndrome 212720
Tags
Green Green List (high evidence)
REEP1
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 31, autosomal dominant, MIM# 610250
Tags
Green Green List (high evidence)
REEP2
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 72, dominant and recessive, MIM# 615625
  • MONDO:0014282
Tags
Green Green List (high evidence)
RNASEH2B
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Aicardi Goutieres syndrome 2, MIM# 610181
Tags
Green Green List (high evidence)
RNF170
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Spastic paraplegia 85, autosomal recessive, MIM# 619686
Tags
Green Green List (high evidence)
RNU7-1
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Aicardi-Goutieres syndrome 9, MIM# 619487
Tags
Green Green List (high evidence)
RTN2
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 12, autosomal dominant, 604805
  • MONDO:0011489
Tags
Green Green List (high evidence)
SACS
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic ataxia, Charlevoix-Saguenay type, MIM@ 270550
Tags
Green Green List (high evidence)
SAMHD1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Aicardi Goutieres syndrome 5, MIM# 612952
Tags
Green Green List (high evidence)
SERAC1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome, MIM# 614739
Tags
Green Green List (high evidence)
SHMT2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities (NEDCASB), MIM#619121
  • Congenital microcephaly
  • Infantile axial hypotonia
  • Spastic paraparesis
  • Global developmental delay
  • Intellectual disability
  • Abnormality of the corpus callosum
  • Abnormal cortical gyration
  • Hypertrophic cardiomyopathy
  • Abnormality of the face
  • Proximal placement of thumb
  • 2-3 toe syndactyly
Tags
Green Green List (high evidence)
SLC16A2
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Allan-Herndon-Dudley syndrome, 300523, XL
Tags
Green Green List (high evidence)
SLC1A4
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic tetraplegia, thin corpus callosum, and progressive microcephaly, 616657
  • MONDO:0014725
Tags
  • founder
Green Green List (high evidence)
SLC2A1
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • GLUT1 deficiency syndrome 1, infantile onset, severe, MIM# 606777
  • Developmental delay
  • autosomal dominant, complicated hereditary spastic paraplegia (HSP)
  • paroxysmal choreoathetosis
  • spastic paraplegia
  • seizure
Tags
Green Green List (high evidence)
SNAPC4
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Neurodevelopmental disorder with motor regression, progressive spastic paraplegia, and oromotor dysfunction, MIM# 620515
Tags
Green Green List (high evidence)
SOD1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Spastic tetraplegia and axial hypotonia, progressive, MIM#618598
Tags
Green Green List (high evidence)
SPART
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Troyer syndrome, MIM# 275900
  • SPG20
  • MONDO:0010156
Tags
Green Green List (high evidence)
SPAST
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 4, autosomal dominant, MIM# 182601
Tags
Green Green List (high evidence)
SPG11
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 11, autosomal recessive, MIM# 604360
Tags
Green Green List (high evidence)
SPG7
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 7, autosomal recessive, MIM# 607259
Tags
Green Green List (high evidence)
SPTAN1
2 reviews
2 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Spastic Paraplegia MONDO:0019064, SPTAN1-related
  • Autosomal dominant spastic paraplegia-91, with or without cerebellar ataxia (SPG91), MIM#620538
Tags
Green Green List (high evidence)
TBCE
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Encephalopathy, progressive, with amyotrophy and optic atrophy 617207
Tags
Green Green List (high evidence)
TECPR2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 49, autosomal recessive, 615031
  • Autonomic-sensory neuropathy
Tags
Green Green List (high evidence)
TFG
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 57, autosomal recessive, MIM# 615658
Tags
Green Green List (high evidence)
TMEM63C
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Spastic paraplegia 87, autosomal recessive, MIM# 619966
Tags
Green Green List (high evidence)
TSPOAP1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Dystonia, intellectual disability and cerebellar atrophy
Tags
Green Green List (high evidence)
TUBA4A
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Hereditary ataxia MONDO:0100309, TUBA4A-related
Tags
Green Green List (high evidence)
TUBB4A
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Leukodystrophy, hypomyelinating, 6, MIM# 612438
Tags
Green Green List (high evidence)
UBAP1
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Childhood-onset hereditary spastic paraplegia
  • Spastic paraplegia 80, autosomal dominant 618418
Tags
Green Green List (high evidence)
UCHL1
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 79A, autosomal dominant, MIM# 620221
  • Spastic paraplegia 79, autosomal recessive, 615491
  • MONDO:0014209
  • Neurodegenerative disease, MONDO:0005559, UCHL1-related
Tags
Green Green List (high evidence)
WDR45B
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Profound developmental delay, early-onset refractory epilepsy, progressive spastic quadriplegia and contractures, and brain malformations
  • Neurodevelopmental disorder with spastic quadriplegia and brain abnormalities with or without seizures, MIM#617977
Tags
Green Green List (high evidence)
ZFYVE26
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 15, autosomal recessive, MIM# 270700
Tags
Amber Amber List (moderate evidence)
AAAS
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Amber
Phenotypes
  • Achalasia-addisonianism-alacrimia syndrome MIM#231550
  • complicated hereditary spastic paraplegia
Tags
Amber Amber List (moderate evidence)
ALK
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Spastic-dystonic diplegia
Tags
Amber Amber List (moderate evidence)
AP5Z1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Amber
Phenotypes
  • Spastic paraplegia 48, autosomal recessive, MIM# 613647
Tags
Amber Amber List (moderate evidence)
CCDC88C
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Early-onset pure hereditary spastic paraplegia
Tags
Amber Amber List (moderate evidence)
CHMP3
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Hereditary spastic paraplegia (MONDO:0019064), CHMP3-related
Tags
Amber Amber List (moderate evidence)
DSTYK
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 23, MIM#270750
Tags
  • founder
  • SV/CNV
Amber Amber List (moderate evidence)
EXOSC3
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Royal Melbourne Hospital
Phenotypes
  • Pontocerebellar hypoplasia, type 1b
  • Complicated hereditary spastic paraplegia
Tags
Amber Amber List (moderate evidence)
GJC2
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Amber
Phenotypes
  • Spastic paraplegia 44, autosomal recessive, MIM# 613206
Tags
Amber Amber List (moderate evidence)
IRF2BPL
1 review
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert list
  • Expert Review Amber
Phenotypes
  • Neurodevelopmental disorder with regression, abnormal movements, loss of speech, and seizures 618088
Tags
Amber Amber List (moderate evidence)
MARS
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 70, autosomal recessive, MIM# 620323
Tags
Amber Amber List (moderate evidence)
PNPLA6
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Amber
Phenotypes
  • Spastic paraplegia 39, autosomal recessive, MIM# 612020
Tags
Amber Amber List (moderate evidence)
RINT1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Infantile liver failure syndrome 3, MIM# 618641
  • Hereditary spastic paraplegia, MONDO:0019064, RINT1-related
Tags
Amber Amber List (moderate evidence)
SEC31A
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Neurodevelopmental disorder with spastic quadriplegia, optic atrophy, seizures, and structural brain anomalies, MIM# 618651
  • congenital neurodevelopmental syndrome
  • spastic paraplegia
  • multiple contractures
  • profound developmental delay
  • epilepsy
  • failure to thrive
Tags
Amber Amber List (moderate evidence)
SELENOI
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 81, autosomal recessive 618768
  • developmental delay
  • spasticity
  • periventricular white mater abnormalities
  • peripheral neuropathy
  • seizures
  • bifid uvula in some affected individuals
Tags
Amber Amber List (moderate evidence)
SOX10
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Royal Melbourne Hospital
Phenotypes
  • Neurocristopathy
  • PCWH syndrome, MIM#609136
  • Complicated hereditary spastic paraplegia
Tags
Amber Amber List (moderate evidence)
SPTSSA
2 reviews
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Spastic paraplegia 90B, autosomal recessive , MIM# 620417
  • Spastic paraplegia 90A, autosomal dominant, MIM# 620416
Tags
Amber Amber List (moderate evidence)
UNC80
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Royal Melbourne Hospital
Phenotypes
  • Hypotonia, infantile, with psychomotor retardation and characteristic facies 2
Tags
Amber Amber List (moderate evidence)
USP8
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Royal Melbourne Hospital
Phenotypes
  • Complicated hereditary spastic paraplegia
Tags
Amber Amber List (moderate evidence)
VAMP1
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Amber
Phenotypes
  • Spastic ataxia 1, autosomal dominant, MIM# 108600
Tags
  • founder
Amber Amber List (moderate evidence)
VPS37A
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 53, autosomal recessive, MIM# 614898, AR
Tags
Red Red List (low evidence)
ACOX1
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • Pseudoneonatal adrenoleukodystrophy
Tags
Red Red List (low evidence)
AMPD2
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia 63 MIM#615686
Tags
Red Red List (low evidence)
ARSI
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • Childhood onset spastic paraplegia
Tags
Red Red List (low evidence)
ATP1A1
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • Hereditary spastic paraplegia
Tags
Red Red List (low evidence)
CCT5
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • Neuropathy, hereditary sensory, with spastic paraplegia
  • Sensory Neuropathy with Spastic Paraplegia
Tags
Red Red List (low evidence)
CLPP
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • Perrault syndrome 3 MIM#614129
Tags
Red Red List (low evidence)
FOXG1
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • Rett syndrome
Tags
Red Red List (low evidence)
GAD1
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
  • Victorian Clinical Genetics Services
Phenotypes
  • Cerebralpalsy, spasticquadriplegic,1, 603513
Tags
Red Red List (low evidence)
GRID2
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert list
  • Expert Review Red
Phenotypes
  • Complicated spastic paraplegia
Tags
Red Red List (low evidence)
HARS2
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • Perrault syndrome 2, MIM#614926
Tags
Red Red List (low evidence)
IFRD1
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • autosomal dominant hereditary spastic paraplegia associated with peripheral neuropathy and ataxia
Tags
  • refuted
Red Red List (low evidence)
KLC4
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • spastic paraplegia
  • progressive complicated spastic paraplegia
Tags
Red Red List (low evidence)
LARS2
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • Perrault syndrome 4 MIM#615300
Tags
Red Red List (low evidence)
MTPAP
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • ?Spastic ataxia 4, autosomal recessive, 613672
  • Ataxia, spastic, 4
  • Spastic ataxia 4, autosomal recessive
Tags
Red Red List (low evidence)
PGAP1
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • Mental retardation, autosomal recessive 42
Tags
Red Red List (low evidence)
SARS2
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • Progressive spastic paraplegia
Tags
Red Red List (low evidence)
SLC19A3
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • Biotin-thiamine-responsive basal ganglia disease, MIM#607483
Tags
Red Red List (low evidence)
SLC33A1
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Red
Phenotypes
  • Spastic paraplegia 42, autosomal dominant, MIM# 612539
Tags
Red Red List (low evidence)
STXBP1
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • Spasticity
  • Early infantile epileptic encephalopathy 4
Tags
Red Red List (low evidence)
TPP1
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • Ceroid lipofuscinosis neuronal 2, MIM#204500
Tags
Red Red List (low evidence)
TTR
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • Amyloidosis, hereditary, transthyretin-related, MIM# 105210
Tags
Red Red List (low evidence)
WDR48
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • Spastic paraplegia
Tags
Red Red List (low evidence)
ZFR
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • Complicated hereditary spastic paraplegia
Tags

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